PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 231aa    MW: 23821.8 Da    PI: 7.2895
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009890.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.6e-40291291100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ 
  HL.SW.v1.0.G009890.1  29 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTVCYEAQARLRDPVYGCVAHIFALQQQVV 117
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkee 100
                           +l++el++l+++
  HL.SW.v1.0.G009890.1 118 SLQTELSYLQAH 129
                           *******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.68728130IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-3929127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MNANPSSSTS SGGGGGNSGS GSGSSGGGPC GACKFLRRKC VAGCIFAPYF DSEQGAAHFA  60
AVHKVFGASN VSKLLLHIPV HKRLDAVVTV CYEAQARLRD PVYGCVAHIF ALQQQVVSLQ  120
TELSYLQAHL ATLELPSPPP APPHQPTLIS PPPLTISDLP SASTVPATYD LSTLFEPIVQ  180
PWPMQQRPLD PRQFGGATGG GGSSGDLQAL ASELLHRHGS PPHGASDVNN *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445237.11e-105hypothetical protein CICLE_v10021992mg
RefseqXP_006491458.11e-105PREDICTED: LOB domain-containing protein 18
SwissprotO221314e-82LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A067HD701e-105A0A067HD70_CITSI; Uncharacterized protein
TrEMBLV4TY071e-105V4TY07_9R
STRINGVIT_15s0048g00830.t012e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.18e-79LOB domain-containing protein 18